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°ä±ô´Ç²Ô±ð¸éâ„¢

Defined supplement for single-cell cloning of human ES and iPS cells

°ä±ô´Ç²Ô±ð¸éâ„¢

Defined supplement for single-cell cloning of human ES and iPS cells

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Defined supplement for single-cell cloning of human ES and iPS cells
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Product Advantages


  • Greatly facilitates the process of genome editing of human ES and iPS cells

  • Compatible with any TeSRâ„¢ maintenance medium and your choice of cell culture matrix

  • Does not require adaptation to single-cell passaging

  • Increases single-cell survival at clonal density across multiple human ES and iPS cell lines

Overview

°ä±ô´Ç²Ô±ð¸éâ„¢ is a defined, serum-free supplement designed to increase the cloning efficiency and single-cell survival of human embryonic stem cells (ES cells) and induced pluripotent stem cells (iPS cells). °ä±ô´Ç²Ô±ð¸éâ„¢ enables the robust generation of clonal cell lines without single-cell adaptation, thus minimizing the risk of acquiring genetic abnormalities.

°ä±ô´Ç²Ô±ð¸éâ„¢ is compatible with the TeSRâ„¢ family of media for human ES and iPS cell maintenance as well as your choice of cell culture matrix.

For improved single-cell survival in additional applications, and higher cloning efficiency, try our °ä±ô´Ç²Ô±ð¸éâ„¢2 supplement.
Subtype
Supplements
Cell Type
Pluripotent Stem Cells
Species
Human
Application
Cell Culture
Brand
CloneR
Area of Interest
Cell Line Development, Disease Modeling, Stem Cell Biology
Formulation Category
Serum-Free

Data Figures

hPSC Single-Cell Cloning Workflow with CloneR™

Figure 1. hPSC Single-Cell Cloning Workflow with CloneR™

On day 0, human pluripotent stem cells (hPSCs) are seeded as single cells at clonal density (e.g. 25 cells/cm2) or sorted at 1 cell per well in 96-well plates in TeSR™ (mTeSR™1 or TeSR™-E8™) medium supplemented with CloneR™. On day 2, the cells are fed with TeSR™ medium containing CloneR™ supplement. From day 4, cells are maintained in TeSR™ medium without CloneR™. Colonies are ready to be picked between days 10 - 14. Clonal cell lines can be maintained long-term in TeSR™ medium.

CloneR™ Increases the Cloning Efficiency of hPSCs and is Compatible with Multiple hPSC Lines and Seeding Protocols

Figure 2. CloneR™ Increases the Cloning Efficiency of hPSCs and is Compatible with Multiple hPSC Lines and Seeding Protocols

TeSR™ medium supplemented with CloneR™ increases hPSC cloning efficiency compared with cells plated in TeSR™ containing ROCK inhibitor. Cells were seeded (A) at clonal density (25 cells/cm2) in mTeSR™1 and TeSR™-E8™ and (B) by single-cell deposition using FACS (seeded at 1 cell/well) in mTeSR™1.

CloneR™ Increases the Cloning Efficiency of hPSCs at Low Seeding Densities

Figure 3. CloneR™ Increases the Cloning Efficiency of hPSCs at Low Seeding Densities

hPSCs plated in mTeSR™1 supplemented with CloneR™ demonstrated significantly increased cloning efficiencies compared to cells plated in mTeSR™1 containing ROCK inhibitor (10μM Y-27632). Shown are representative images of alkaline phosphatase-stained colonies at day 7 in individual wells of a 12-well plate. H1 human embryonic stem (hES) cells were seeded at clonal density (100 cells/well, 25 cells/cm2) in mTeSR™1 supplemented with (A) ROCK inhibitor or (B) CloneR™ on Vitronectin XF™ cell culture matrix.

CloneR™ Yields Larger Single-Cell Derived Colonies

Figure 4. CloneR™ Yields Larger Single-Cell Derived Colonies

hPSCs seeded in mTeSR™1 supplemented with CloneR™ result in larger colonies than cells seeded in mTeSR™1 containing ROCK inhibitor (10μM Y-27632). Shown are representative images of hPSC clones established after 7 days of culture in mTeSR™1 supplemented with (A) ROCK inhibitor or (B) CloneR™.

Clonal Cell Lines Established Using CloneR™ Display Characteristic hPSC Morphology

Figure 5. Clonal Cell Lines Established Using CloneR™ Display Characteristic hPSC Morphology

Clonal cell lines established using mTeSR™1 or TeSR™-E8™ medium supplemented with CloneR™ retain the prominent nucleoli and high nuclear-to-cytoplasmic ratio characteristic of hPSCs. Representative images at passage 7 after cloning are shown for clones derived from the parental (A) H1 hES cell and (B) WLS-1C human induced pluripotent stem (iPS) cell lines.

Clonal Cell Lines Established with CloneR™ Express High Levels of Undifferentiated Cell Markers

Figure 6. Clonal Cell Lines Established with CloneR™ Express High Levels of Undifferentiated Cell Markers

hPSC clonal cell lines established using mTeSR™1 supplemented with CloneR™ express comparable levels of undifferentiated cell markers, OCT4 (Catalog #60093) and TRA-1-60 (Catalog #60064), as the parental cell lines. (A) Clonal cell lines established from parental H1 hES cell line. (B) Clonal cell lines established from parental WLS-1C hiPS cell line. Data is presented between passages 5 - 7 after cloning and is shown as mean ± SEM; n = 2.

Clonal Cell Lines Established Using CloneR™ Display a Normal Karyotype

Figure 7. Clonal Cell Lines Established Using CloneR™ Display a Normal Karyotype

Representative karyograms of clones derived from parental (A) H1 hES cell and (B) WLS-1C hiPS cell lines demonstrate that the clonal lines established with CloneR™ have a normal karyotype. Cells were karyotyped 5 passages after cloning, with an overall passage number of 45 and 39, respectively.

Clonal Cell Lines Established Using CloneR™ Display Normal Growth Rates

Figure 8. Clonal Cell Lines Established Using CloneR™ Display Normal Growth Rates

Fold expansion of clonal cell lines display similar growth rates to parental cell lines. Shown are clones (red) and parental cell lines (gray) for (A) H1 hES cell and (B) WLS-1C hiPS cell lines.

Cell morphology images of ES cells plated in ³¾°Õ±ð³§¸éâ„¢1 and mTeSRâ„¢ Plus and supplemented with °ä±ô´Ç²Ô±ð¸éâ„¢ immediately following RNP electroporation.

Figure 9. Representative Cell Morphology 24 Hours After RNP Electroporation in ³¾°Õ±ð³§¸éâ„¢1 and mTeSRâ„¢ Plus

H1-eGFP ES cells were plated in (A) ³¾°Õ±ð³§¸éâ„¢1 and (B) mTeSRâ„¢ Plus and supplemented with °ä±ô´Ç²Ô±ð¸éâ„¢ immediately following RNP electroporation. Images were taken 24 hours after electroporation.

Cell images of human ES colonies plated in ³¾°Õ±ð³§¸éâ„¢1 and mTeSRâ„¢ Plus and supplemented with °ä±ô´Ç²Ô±ð¸éâ„¢ on CellAdhereâ„¢ Vitronectinâ„¢ XFâ„¢-coated plates.

Figure 10. Clones Derived in mTeSRâ„¢ Plus are Larger and Ready to Be Picked at an Earlier Timepoint

Representative images of human ES (H9) colonies taken 8 days following singlecell plating at clonal density (25 cells/cm²) in either (A) ³¾°Õ±ð³§¸éâ„¢1 or (B) mTeSRâ„¢ Plus supplemented with °ä±ô´Ç²Ô±ð¸éâ„¢ on CellAdhereâ„¢ Vitronectinâ„¢ XFâ„¢-coated plates.

Protocols and Documentation

Find supporting information and directions for use in the Product Information Sheet or explore additional protocols below.

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05888
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English
Document Type
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05889
Lot #
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English
Document Type
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05888
Lot #
All
Language
English

Applications

This product is designed for use in the following research area(s) as part of the highlighted workflow stage(s). Explore these workflows to learn more about the other products we offer to support each research area.

Resources and Publications

Educational Materials (26)

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Publications (51)

SIRPα ablated iPSC-derived macrophages resist hypophagia and enhance mAb-dependent and CAR-mediated cytotoxicity of solid tumors. P. Smith et al. Molecular therapy. Oncology 2026 Jun

Abstract

The SIRPα-CD47 "don't eat me" checkpoint axis plays a critical role in shaping antitumor activities of macrophages within the tumor microenvironment (TME). However, targeting this axis with anti-CD47 antibodies to enhance antitumor responses in clinical trials has been challenging. Here, we demonstrated that SIRPA-knockout (KO) iPSC-derived macrophages (iMacs) exhibit superior antitumor activity against various CD47-expressing tumors in vitro when combined with cancer-targeted monoclonal antibodies (mAbs) or chimeric antigen receptors (CARs). Moreover, SIRPA-KO protected macrophages from mAb- and CAR-driven hypophagia, enabling efficient tumoricidal effects even after serial tumor exposures. Retention of phagocytic activities in SIRPA-KO iMacs was associated with heightened surface expression of Fc receptors and GD2-CAR compared to their SIRPA-expressing counterparts. Despite the powerful impact of SIRPA-KO on iMac antitumor activities in vitro, only modest efficacy was observed in human xenograft mouse models of SK-OV3 ovarian carcinoma and CHLA-163 neuroblastoma treated with mAb or CAR-iMac therapy, indicating further engineering or combinatorial therapeutic strategies are needed for potent in vivo antitumor efficacy. Together, these findings identify SIRPα as a regulator in macrophage hypophagia and underscore the advantages of using SIRPA-KO macrophage therapeutic strategies to modulate the SIRPα-CD47 checkpoint to unleash macrophage antitumor activity within the TME.
A Cell-Based Functional Assay Calibrated for Analysis of MSH6 and MSH2 Mismatch Repair Gene Variants. E. Szabo et al. Human mutation 2025 Sep

Abstract

Variants of uncertain significance (VUS) in the DNA mismatch repair (MMR) genes can confound the diagnosis and treatment of suspected Lynch syndrome (LS) patients. To aid the reclassification of VUS, we developed the in cellulo analysis of MMR variants (inCAMA) and used known control variants to calibrate this assay such that results can be readily applied as functional evidence by expert classification panels. We used CRISPR gene engineering to introduce known pathogenic and benign variants into the MSH6 or MSH2 loci in human embryonic stem cells and assessed their effects on cellular MMR repair and damage response functions. Our functional assay successfully discerned known pathogenic and benign variants. Using these results and performing a linear regression analysis with available odds of pathogenicity scores for the known calibration variants, we created equations that can generate a functional odds of pathogenicity score for any future MSH6 or MSH2 variant tested. In summary, inCAMA represents a new, calibrated assay for testing the function of virtually any MSH6 or MSH2 variant. The conversion of assay results directly into odds of pathogenicity scores makes it possible to use any PS3 or BS3 evidence strength level toward the reclassification of VUS.
A patient-specific engineered tissue model of BAG3-mediated cardiomyopathy M. A. J. Morsink et al. Journal of Tissue Engineering 2025 Sep

Abstract

Pathogenic mutations in Bcl2-associated athanogene 3 (BAG3) cause genetic dilated cardiomyopathy (DCM), a disease characterized by ventricular dilation, systolic dysfunction, and fibrosis. Previous studies have demonstrated that BAG3 mediates sarcomeric protein turnover through chaperone-assisted selective autophagy to maintain sarcomere integrity in the human heart. Although mouse models provide valuable insights into whole-organism effects of BAG3 knockout or pathogenic variants, their utility is limited by species-specific differences in pathophysiology, which often do not translate to humans and contribute to the failure of clinical trials. As a result, the development of induced pluripotent stem cell-derived cardiomyocytes (iCM) and engineered heart tissues presents a promising alternative for studying adult-onset cardiac diseases. Here, we used genome engineering to generate an isogenic pseudo-wild-type control cell line from a patient-derived iPSC line carrying a pathogenic BAG3 variant, clinically presenting with DCM. While monolayer iCMs recapitulated some features of BAG3-mediated DCM, such as reduced autophagy, mitochondrial membrane potential, and decreased HSPB8 stability, they failed to develop the age-associated impairment in sarcomere integrity. Therefore, we developed a mature, patient-specific, human engineered heart tissue model of BAG3-mediated DCM and compared it to its isogenic healthy control. We demonstrated successful recapitulation of adult-like features of the clinically observed disorganized sarcomeres and impaired tissue contractility, thereby providing a platform to investigate BAG3-related pathophysiology and therapeutic interventions. Graphical abstract